Detailed information of SNP:
|
SNP ID:
sf0308475821(Gbrowse)
Chromosome: chr03 Position: 8475821 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 89.07% | 10.93% |
| All Indica | 796 | 97.24% | 2.76% |
| All Japonica | 490 | 74.29% | 25.71% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 328 | 65.55% | 34.45% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308475821 | T->C | LOC_Os03g15450(LOC_Os03g15450.1) | INTRON |