Detailed information of SNP:
|
SNP ID:
sf0308534667(Gbrowse)
Chromosome: chr03 Position: 8534667 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1277 | 98.98% | 1.02% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 359 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 244 | 99.18% | 0.82% |
| Tropical Japonica | 70 | 98.57% | 1.43% |
| Japonica Intermediate | 45 | 77.78% | 22.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308534667 | A->C | INTERGENIC | None |