Detailed information of SNP:
|
SNP ID:
sf0308542376(Gbrowse)
Chromosome: chr03 Position: 8542376 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 98.92% | 1.08% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 466 | 96.78% | 3.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 99.37% | 0.63% |
| Tropical Japonica | 86 | 87.21% | 12.79% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308542376 | G->A | INTERGENIC | None |