Detailed information of SNP:
|
SNP ID:
sf0308566839(Gbrowse)
Chromosome: chr03 Position: 8566839 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.59% | 48.41% |
| All Indica | 799 | 27.28% | 72.72% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 13.60% | 86.40% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308566839 | T->A | INTERGENIC | None |