Detailed information of SNP:
|
SNP ID:
sf0308661074(Gbrowse)
Chromosome: chr03 Position: 8661074 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 71.28% | 28.72% |
| All Indica | 798 | 61.78% | 38.22% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308661074 | T->C | LOC_Os03g15700(LOC_Os03g15700.1) | INTRON |