Detailed information of SNP:
|
SNP ID:
sf0308687618(Gbrowse)
Chromosome: chr03 Position: 8687618 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 68.83% | 31.17% |
| All Indica | 795 | 57.11% | 42.89% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 373 | 81.50% | 18.50% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 209 | 60.77% | 39.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308687618 | A->G | LOC_Os03g15760(LOC_Os03g15760.1) | Synonymous |