Detailed information of SNP:
|
SNP ID:
sf0308687677(Gbrowse)
Chromosome: chr03 Position: 8687677 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 96.23% | 3.77% |
| All Indica | 784 | 93.49% | 6.51% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 203 | 84.24% | 15.76% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308687677 | G->A | LOC_Os03g15760(LOC_Os03g15760.1) | Non-Synonymous SNP |