Detailed information of SNP:
|
SNP ID:
sf0308713916(Gbrowse)
Chromosome: chr03 Position: 8713916 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.80% | 48.20% |
| All Indica | 797 | 66.25% | 33.75% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 211 | 30.81% | 69.19% |
| Indica Intermediate | 211 | 68.72% | 31.28% |
| Temperate Japonica | 335 | 32.24% | 67.76% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308713916 | G->A | INTERGENIC | None |