Detailed information of SNP:
|
SNP ID:
sf0308976564(Gbrowse)
Chromosome: chr03 Position: 8976564 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1140 | 83.42% | 16.58% |
| All Indica | 532 | 91.17% | 8.83% |
| All Japonica | 496 | 83.47% | 16.53% |
| Aus | 62 | 25.81% | 74.19% |
| Indica I | 289 | 95.16% | 4.84% |
| Indica II | 122 | 85.25% | 14.75% |
| Indica Intermediate | 121 | 87.60% | 12.40% |
| Temperate Japonica | 334 | 78.74% | 21.26% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0308976564 | T->C | INTERGENIC | None |