Detailed information of SNP:



SNP ID: sf0308976564(Gbrowse)

Chromosome: chr03

Position: 8976564
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1140 83.42% 16.58%
All Indica532 91.17% 8.83%
All Japonica496 83.47% 16.53%
Aus62 25.81% 74.19%
Indica I289 95.16% 4.84%
Indica II122 85.25% 14.75%
Indica Intermediate121 87.60% 12.40%
Temperate Japonica334 78.74% 21.26%
Tropical Japonica94 92.55% 7.45%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 85.71% 14.29%
Intermediate36 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0308976564 T->C INTERGENIC None