Detailed information of SNP:
|
SNP ID:
sf0309054980(Gbrowse)
Chromosome: chr03 Position: 9054980 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1204 | 70.93% | 29.07% |
| All Indica | 587 | 58.09% | 41.91% |
| All Japonica | 495 | 82.02% | 17.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 300 | 81.00% | 19.00% |
| Indica II | 164 | 13.41% | 86.59% |
| Indica Intermediate | 123 | 61.79% | 38.21% |
| Temperate Japonica | 333 | 77.48% | 22.52% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309054980 | T->C | INTERGENIC | None |