Detailed information of SNP:
|
SNP ID:
sf0309091981(Gbrowse)
Chromosome: chr03 Position: 9091981 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 69.71% | 30.29% |
| All Indica | 793 | 47.79% | 52.21% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 69.44% | 30.56% |
| Indica II | 209 | 16.75% | 83.25% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309091981 | G->T | INTERGENIC | None |