Detailed information of SNP:
|
SNP ID:
sf0309105417(Gbrowse)
Chromosome: chr03 Position: 9105417 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 94.77% | 5.23% |
| All Indica | 757 | 91.02% | 8.98% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 360 | 93.61% | 6.39% |
| Indica II | 207 | 91.30% | 8.70% |
| Indica Intermediate | 190 | 85.79% | 14.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309105417 | C->T | INTERGENIC | None |