Detailed information of SNP:
|
SNP ID:
sf0309107410(Gbrowse)
Chromosome: chr03 Position: 9107410 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 76.19% | 23.81% |
| All Indica | 738 | 62.74% | 37.26% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 46.88% | 53.12% |
| Indica I | 361 | 79.22% | 20.78% |
| Indica II | 182 | 34.62% | 65.38% |
| Indica Intermediate | 195 | 58.46% | 41.54% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309107410 | G->A | LOC_Os03g16530(LOC_Os03g16530.1) | SNPs that introduce stop codons |