Detailed information of SNP:
|
SNP ID:
sf0309198038(Gbrowse)
Chromosome: chr03 Position: 9198038 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1220 | 70.66% | 29.34% |
| All Indica | 606 | 52.48% | 47.52% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 329 | 72.04% | 27.96% |
| Indica II | 91 | 16.48% | 83.52% |
| Indica Intermediate | 186 | 35.48% | 64.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 36 | 69.44% | 30.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309198038 | G->A | INTERGENIC | None |