Detailed information of SNP:
|
SNP ID:
sf0309318536(Gbrowse)
Chromosome: chr03 Position: 9318536 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 60.51% | 39.49% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 493 | 11.76% | 88.24% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 90 | 45.56% | 54.44% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309318536 | T->C | INTERGENIC | None |