Detailed information of SNP:
|
SNP ID:
sf0309336290(Gbrowse)
Chromosome: chr03 Position: 9336290 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 50.11% | 49.89% |
| All Indica | 799 | 32.29% | 67.71% |
| All Japonica | 492 | 81.10% | 18.90% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 11.20% | 88.80% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 19.10% | 80.90% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309336290 | C->T | INTERGENIC | None |