Detailed information of SNP:
|
SNP ID:
sf0309399206(Gbrowse)
Chromosome: chr03 Position: 9399206 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 93.67% | 6.33% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 468 | 82.05% | 17.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 76.92% | 23.08% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 64 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309399206 | G->A | INTERGENIC | None |