Detailed information of SNP:
|
SNP ID:
sf0309689661(Gbrowse)
Chromosome: chr03 Position: 9689661 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1207 | 94.95% | 5.05% |
| All Indica | 689 | 100.00% | 0.00% |
| All Japonica | 400 | 84.75% | 15.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 302 | 100.00% | 0.00% |
| Indica II | 191 | 100.00% | 0.00% |
| Indica Intermediate | 196 | 100.00% | 0.00% |
| Temperate Japonica | 267 | 78.28% | 21.72% |
| Tropical Japonica | 82 | 98.78% | 1.22% |
| Japonica Intermediate | 51 | 96.08% | 3.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309689661 | A->G | INTERGENIC | None |