Detailed information of SNP:
|
SNP ID:
sf0309807523(Gbrowse)
Chromosome: chr03 Position: 9807523 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 95.76% | 4.24% |
| All Indica | 777 | 93.18% | 6.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 362 | 92.54% | 7.46% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309807523 | T->C | LOC_Os03g17634(LOC_Os03g17634.1) | INTRON |