Detailed information of SNP:
|
SNP ID:
sf0309821295(Gbrowse)
Chromosome: chr03 Position: 9821295 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 84.99% | 15.01% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 430 | 54.88% | 45.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 52.65% | 47.35% |
| Tropical Japonica | 69 | 53.62% | 46.38% |
| Japonica Intermediate | 59 | 67.80% | 32.20% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0309821295 | G->A | INTERGENIC | None |