Detailed information of SNP:
|
SNP ID:
sf0310027314(Gbrowse)
Chromosome: chr03 Position: 10027314 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.02% | 38.98% |
| All Indica | 797 | 40.53% | 59.47% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 373 | 36.73% | 63.27% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310027314 | G->A | LOC_Os03g18020(LOC_Os03g18020.1) | Non-Synonymous SNP |