Detailed information of SNP:
|
SNP ID:
sf0310110194(Gbrowse)
Chromosome: chr03 Position: 10110194 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 68.74% | 31.26% |
| All Indica | 795 | 58.11% | 41.89% |
| All Japonica | 496 | 85.89% | 14.11% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 69.17% | 30.83% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310110194 | T->A | INTERGENIC | None |