Detailed information of SNP:
SNP ID:
sf0310110318(Gbrowse)
Chromosome: chr03 Position: 10110318 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 68.78% | 31.22% |
All Indica | 799 | 98.87% | 1.13% |
All Japonica | 497 | 14.69% | 85.31% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.40% | 1.60% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 0.30% | 99.70% |
Tropical Japonica | 94 | 70.21% | 29.79% |
Japonica Intermediate | 68 | 8.82% | 91.18% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0310110318 | C->T | INTERGENIC | None |