Detailed information of SNP:
|
SNP ID:
sf0310119625(Gbrowse)
Chromosome: chr03 Position: 10119625 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.98% | 21.02% |
| All Indica | 798 | 63.66% | 36.34% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 66.58% | 33.42% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310119625 | C->A | LOC_Os03g18130(LOC_Os03g18130.3) | Synonymous |
| sf0310119625 | C->A | LOC_Os03g18130(LOC_Os03g18130.2) | Synonymous |
| sf0310119625 | C->A | LOC_Os03g18130(LOC_Os03g18130.1) | Synonymous |
| sf0310119625 | C->A | LOC_Os03g18130(LOC_Os03g18130.4) | Synonymous |
| sf0310119625 | C->A | LOC_Os03g18120(LOC_Os03g18120.1) | UTR_3_PRIME |