Detailed information of SNP:
SNP ID:
sf0310141675(Gbrowse)
Chromosome: chr03 Position: 10141675 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 68.85% | 31.15% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 14.29% | 85.71% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 0.30% | 99.70% |
Tropical Japonica | 94 | 69.15% | 30.85% |
Japonica Intermediate | 68 | 7.35% | 92.65% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0310141675 | A->C | INTERGENIC | None |