Detailed information of SNP:
|
SNP ID:
sf0310171606(Gbrowse)
Chromosome: chr03 Position: 10171606 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 59.93% | 40.07% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310171606 | G->T | LOC_Os03g18160(LOC_Os03g18160.1) | INTRON |