Detailed information of SNP:
|
SNP ID:
sf0310222396(Gbrowse)
Chromosome: chr03 Position: 10222396 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1232 | 95.21% | 4.79% |
| All Indica | 624 | 91.51% | 8.49% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 94.92% | 5.08% |
| Indica I | 284 | 90.85% | 9.15% |
| Indica II | 162 | 92.59% | 7.41% |
| Indica Intermediate | 178 | 91.57% | 8.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310222396 | A->G | INTERGENIC | None |