Detailed information of SNP:
|
SNP ID:
sf0310226184(Gbrowse)
Chromosome: chr03 Position: 10226184 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.39% | 49.61% |
| All Indica | 799 | 15.89% | 84.11% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310226184 | C->T | INTERGENIC | None |