Detailed information of SNP:
|
SNP ID:
sf0310239677(Gbrowse)
Chromosome: chr03 Position: 10239677 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1226 | 78.63% | 21.37% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 314 | 21.02% | 78.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 217 | 22.58% | 77.42% |
| Tropical Japonica | 63 | 12.70% | 87.30% |
| Japonica Intermediate | 34 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 70.59% | 29.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310239677 | A->C | INTERGENIC | None |