Detailed information of SNP:
|
SNP ID:
sf0310278399(Gbrowse)
Chromosome: chr03 Position: 10278399 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.47% | 47.53% |
| All Indica | 798 | 82.71% | 17.29% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 77.81% | 22.19% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310278399 | T->C | INTERGENIC | None |