Detailed information of SNP:
|
SNP ID:
sf0310512325(Gbrowse)
Chromosome: chr03 Position: 10512325 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 66.23% | 33.77% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 496 | 13.91% | 86.09% |
| Aus | 24 | 79.17% | 20.83% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310512325 | C->T | INTERGENIC | None |