Detailed information of SNP:
SNP ID:
sf0310512325(Gbrowse)
Chromosome: chr03 Position: 10512325 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1368 | 66.23% | 33.77% |
All Indica | 796 | 99.37% | 0.63% |
All Japonica | 496 | 13.91% | 86.09% |
Aus | 24 | 79.17% | 20.83% |
Indica I | 374 | 99.20% | 0.80% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 209 | 99.52% | 0.48% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 93 | 69.89% | 30.11% |
Japonica Intermediate | 68 | 5.88% | 94.12% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0310512325 | C->T | INTERGENIC | None |