Detailed information of SNP:
|
SNP ID:
sf0310569603(Gbrowse)
Chromosome: chr03 Position: 10569603 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 84.10% | 15.90% |
| All Indica | 797 | 92.22% | 7.78% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310569603 | A->G | INTERGENIC | None |