Detailed information of SNP:
|
SNP ID:
sf0310761354(Gbrowse)
Chromosome: chr03 Position: 10761354 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 68.03% | 31.97% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 18.91% | 81.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310761354 | G->A | INTERGENIC | None |