Detailed information of SNP:
|
SNP ID:
sf0310906017(Gbrowse)
Chromosome: chr03 Position: 10906017 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 86.61% | 13.39% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 489 | 79.96% | 20.04% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 62 | 79.03% | 20.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0310906017 | G->A | INTERGENIC | None |