Detailed information of SNP:
SNP ID:
sf0311145759(Gbrowse)
Chromosome: chr03 Position: 11145759 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1413 | 96.39% | 3.61% |
All Indica | 793 | 93.95% | 6.05% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 369 | 92.14% | 7.86% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 92.89% | 7.11% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0311145759 | G->A | LOC_Os03g19800(LOC_Os03g19800.1) | INTRON |