Detailed information of SNP:
|
SNP ID:
sf0311202666(Gbrowse)
Chromosome: chr03 Position: 11202666 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 63.87% | 36.13% |
| All Indica | 778 | 54.24% | 45.76% |
| All Japonica | 495 | 78.59% | 21.41% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 362 | 32.87% | 67.13% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 204 | 49.02% | 50.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311202666 | C->T | LOC_Os03g19920(LOC_Os03g19920.1) | INTRON |