Detailed information of SNP:
|
SNP ID:
sf0311213049(Gbrowse)
Chromosome: chr03 Position: 11213049 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 72.23% | 27.77% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 22.74% | 77.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311213049 | C->T | LOC_Os03g19930(LOC_Os03g19930.3) | INTRON |
| sf0311213049 | C->T | LOC_Os03g19930(LOC_Os03g19930.4) | INTRON |
| sf0311213049 | C->T | LOC_Os03g19930(LOC_Os03g19930.1) | INTRON |
| sf0311213049 | C->T | LOC_Os03g19930(LOC_Os03g19930.2) | UTR_3_PRIME |