Detailed information of SNP:
|
SNP ID:
sf0311296496(Gbrowse)
Chromosome: chr03 Position: 11296496 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 91.25% | 8.75% |
| All Indica | 712 | 84.13% | 15.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 93.09% | 6.91% |
| Indica II | 154 | 55.84% | 44.16% |
| Indica Intermediate | 196 | 89.80% | 10.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311296496 | G->A | LOC_Os03g20050(LOC_Os03g20050.1) | Non-Synonymous SNP |