Detailed information of SNP:
|
SNP ID:
sf0311296532(Gbrowse)
Chromosome: chr03 Position: 11296532 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1275 | 96.78% | 3.22% |
| All Indica | 657 | 93.76% | 6.24% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 322 | 94.41% | 5.59% |
| Indica II | 140 | 92.14% | 7.86% |
| Indica Intermediate | 195 | 93.85% | 6.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311296532 | G->C | LOC_Os03g20050(LOC_Os03g20050.1) | Non-Synonymous SNP |