Detailed information of SNP:
|
SNP ID:
sf0311303093(Gbrowse)
Chromosome: chr03 Position: 11303093 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 70.09% | 29.91% |
| All Indica | 769 | 49.80% | 50.20% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 363 | 66.94% | 33.06% |
| Indica II | 200 | 8.50% | 91.50% |
| Indica Intermediate | 206 | 59.71% | 40.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311303093 | G->A | LOC_Os03g20060(LOC_Os03g20060.1) | INTRON |