Detailed information of SNP:
|
SNP ID:
sf0311392288(Gbrowse)
Chromosome: chr03 Position: 11392288 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 72.92% | 27.08% |
| All Indica | 787 | 55.65% | 44.35% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 369 | 75.34% | 24.66% |
| Indica II | 209 | 20.57% | 79.43% |
| Indica Intermediate | 209 | 55.98% | 44.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311392288 | G->A | INTERGENIC | None |