Detailed information of SNP:
|
SNP ID:
sf0311400998(Gbrowse)
Chromosome: chr03 Position: 11400998 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 64.73% | 35.27% |
| All Indica | 797 | 53.58% | 46.42% |
| All Japonica | 496 | 79.03% | 20.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 32.89% | 67.11% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311400998 | C->T | INTERGENIC | None |