Detailed information of SNP:
|
SNP ID:
sf0311426218(Gbrowse)
Chromosome: chr03 Position: 11426218 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 71.04% | 28.96% |
| All Indica | 784 | 52.30% | 47.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 370 | 71.08% | 28.92% |
| Indica II | 205 | 15.12% | 84.88% |
| Indica Intermediate | 209 | 55.50% | 44.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311426218 | G->A | INTERGENIC | None |