Detailed information of SNP:
|
SNP ID:
sf0311436274(Gbrowse)
Chromosome: chr03 Position: 11436274 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 74.29% | 25.71% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 488 | 27.66% | 72.34% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 4.86% | 95.14% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 65 | 43.08% | 56.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311436274 | A->G | INTERGENIC | None |