Detailed information of SNP:
|
SNP ID:
sf0311455709(Gbrowse)
Chromosome: chr03 Position: 11455709 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 70.77% | 29.23% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 495 | 22.83% | 77.17% |
| Aus | 27 | 88.89% | 11.11% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 73.53% | 26.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311455709 | C->T | INTERGENIC | None |