Detailed information of SNP:
|
SNP ID:
sf0311461455(Gbrowse)
Chromosome: chr03 Position: 11461455 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.83% | 35.17% |
| All Indica | 796 | 48.37% | 51.63% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 68.36% | 31.64% |
| Indica II | 212 | 10.38% | 89.62% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311461455 | T->C | LOC_Os03g20280(LOC_Os03g20280.1) | INTRON |