Detailed information of SNP:



SNP ID: sf0311517432(Gbrowse)

Chromosome: chr03

Position: 11517432
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 72.66% 27.34%
All Indica799 99.87% 0.13%
All Japonica497 23.74% 76.26%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 0.60% 99.40%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 35.29% 64.71%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0311517432 A->G LOC_Os03g20350(LOC_Os03g20350.1) Synonymous