Detailed information of SNP:
|
SNP ID:
sf0311685023(Gbrowse)
Chromosome: chr03 Position: 11685023 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 73.08% | 26.92% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 483 | 23.60% | 76.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 322 | 0.93% | 99.07% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311685023 | T->A | INTERGENIC | None |