Detailed information of SNP:
|
SNP ID:
sf0311730674(Gbrowse)
Chromosome: chr03 Position: 11730674 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 57.44% | 42.56% |
| All Indica | 790 | 96.20% | 3.80% |
| All Japonica | 493 | 3.04% | 96.96% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 90 | 13.33% | 86.67% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311730674 | C->A | INTERGENIC | None |