Detailed information of SNP:
|
SNP ID:
sf0311731019(Gbrowse)
Chromosome: chr03 Position: 11731019 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 73.83% | 26.17% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 472 | 24.15% | 75.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 313 | 0.64% | 99.36% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 30.30% | 69.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311731019 | C->T | INTERGENIC | None |